Next: 7. The Image Processing Up: bioimagesuite_manual Previous: 6. Advanced Image Visualization Contents
2 B. Anatomical Image Analysis
Subsections
- 7. The Image Processing and Histogram Tools
- 7.1 Introduction
- 7.2 ``Image'' and ``Results''
- 7.3 Histogram Control
- 7.4 The Image Processing Control
- 7.5 EXAMPLE: Reorientation of Images
- 8. The Interactive Segmentation Tools
- 8.1 Introduction
- 8.2 The Objectmap Editor Tools
- 8.3 The Surface Editor
- 8.4 Delineating a surface: a step-by-step recipe.
- 9. Tissue Classification
- 9.1 Accessing the Segmentation Tool
- 9.2 Math Morphology
- 9.3 Histogram Segmentation
- 9.4 FSL Brain Extraction Tool
- 9.5 Grey/White Segmentation - using FSL Fast
- 9.6 Bias Field Correction
- 9.7 Appendix: A Little bit of Theory
- 10. Linear Registration
- 10.1 Accessing the Registration Tools
- 10.2 Registration | Transformation
- 10.3 Manual Registration
- 10.4 Linear Registration (Intensity Based)
- 10.5 Functional Overlay
- 10.6 Image Compare
- 10.7 EXAMPLE: Interactive Registration Tools
- 10.8 Linear Transformations Theory:
- 11. Non Linear Registration
- 11.1 Introduction
- 11.2 Visualizing NonLinear Transformations
- 11.3 Nonrigid Registration (Intensity Based)
- 11.4 Distortion Correction (Single Axis Distortion)
- 11.5 Batch Mode Registration
- 11.6 Example: Co-register reference 3D brain with individual 3D brain
- 11.7 Checking 3D to Reference non-linear registrations
- 11.8 Remarks
- 12. Landmarks, Surfaces and Point-based Registration